Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M37 Chr16q_UniqueNum	BreastC_M37 Chr16q_pVal	BreastC_M37 Chr16q_Unique	ColonC_M17 Chr19 Chr11q Chr16_UniqueNum	ColonC_M17 Chr19 Chr11q Chr16_pVal	ColonC_M17 Chr19 Chr11q Chr16_Unique
GRATIAS_RETINOBLASTOMA_16Q24	10	APRT|CHMP1A|COX4I1|EMC8|GALNS|KIAA0513|MAP1LC3B|MBTPS1|TLDC1|ZDHHC7	4.60559080882e-10	6	2.75536899212e-30	ANKRD11|SPG7|TCF25|TRAPPC2L|USP10|ZCCHC14	1	9.21118161764e-10	SLC7A5
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_DN	24	AARS|APRT|CENPN|CFDP1|CMC2|CNOT1|COQ9|COX4I1|CTCF|DDX19A|DDX28|DEF8|EMC8|ETFB|ITFG1|KATNB1|MAP1LC3B|MON1B|NAE1|PRMT7|TERF2IP|TMEM208|UTP4|ZDHHC7	1.97322600034e-09	14	3.45555890925e-35	ANKRD11|ATMIN|CBFB|CDH1|CHD9|DYNC1LI2|FAM201A|HSDL1|MARVELD3|PAPD5|PHLPP2|RBL2|SPG7|TCF25	15	3.94645200069e-09	CCNE1|CRAMP1|FAM216A|GINS2|MCM3|MKL2|MPHOSPH6|MRPL28|MRPS34|NDUFB10|POLR3K|RSL1D1|SNRNP25|USP7|ZNF276
GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_DN	17	AARS|APRT|CENPN|CFDP1|CHMP1A|CIAPIN1|ETFB|HSBP1|IST1|ITFG1|MBTPS1|MLYCD|MON1B|NAE1|OGFOD1|RPL13|ZFP90	4.3774648542e-08	13	3.62029870483e-25	ANKRD11|ATMIN|CHD9|CYB5B|DYNC1LI2|FA2H|HSDL1|NUDT21|PAPD5|RBL2|SPG7|TCF25|TRAPPC2L	19	8.75492970841e-08	C16ORF91|CRAMP1|EIF1AD|FTO|GINS2|GSPT1|HAGH|LRP2|MKL2|MPHOSPH6|NDUFAB1|NDUFB10|NUDT16L1|POLR3K|PTPMT1|RMI2|TANGO6|USP7|ZBED5-AS1
GSE41867_NAIVE_VS_DAY30_LCMV_ARMSTRONG_MEMORY_CD8_TCELL_DN	4	CIAPIN1|DDX19A|ETFB|SLC7A6OS	0.00037988373713	5	0.000673028217276	DNAJA2|GAN|NUTF2|TAF1C|ZC3H18	26	8.67392569839e-05	ALG3|API5|CDC34|CHORDC1|DCPS|DPP3|HMGA1|HSPBP1|KIAA1191|KRI1|LIG1|LONP1|LTA4H|MBD3|NDUFS3|OGDH|PTBP1|PUS3|RDH13|SCYL1|SGTA|TANGO6|TBL3|TMEM147|UBE2M|WEE1
GSE45365_CD8A_DC_VS_CD11B_DC_DN	16	APRT|CENPN|CHMP1A|CNOT1|COQ9|DEF8|EMC8|FAM96B|ITFG1|KLHDC4|NAE1|PIEZO1|PLA2G15|TERF2IP|TMEM208|UTP4	7.1611364702e-05	11	2.39810447242e-21	AKTIP|ANKRD11|ARL2BP|BBS2|CBFB|CHD9|PAPD5|TCF25|TRAPPC2L|USP10|ZCCHC14	13	0.000143222729404	ANKRD26|C16ORF91|FAM216A|FTO|GINS2|MKL2|MPHOSPH6|MSH6|NUBP1|POLR3K|RMI2|SNRNP25|ZKSCAN2
GSE45365_HEALTHY_VS_MCMV_INFECTION_BCELL_IFNAR_KO_DN	15	APRT|BANP|CENPN|COQ9|COX4I1|DDX28|EMC8|ITFG1|KLHDC4|KLHL36|NAE1|NIP7|TLDC1|UTP4|ZFP90	8.6533366914e-08	11	7.2953042831e-20	ARL2BP|BBS2|CMTM4|CYB5B|FAM201A|GAN|TCF25|TRAPPC2L|ZC3H18|ZFPM1|ZNF23	21	1.73066733828e-07	ANKRD26|C16ORF91|ENPP1|FAM216A|FTO|GINS2|IRF6|METTL26|MPG|MPHOSPH6|NUBP1|POLR3K|RAB25|RAB40C|RMI2|SPATA17|THAP12|UBE2I|USP7|ZKSCAN2|ZSCAN5A
Human Breast_Barry10_205genes (20368555-TS-2)	13	AARS|AP1G1|CFAP20|CIAPIN1|COG4|DEF8|EMC8|ESRP2|FAM96B|HSBP1|NUP93|PIEZO1|TMEM208	0.000138920213671	9	1.98900802267e-16	ADGRG1|DBNDD1|FA2H|HEATR3|MMP15|MVD|NOL3|NUDT21|TRADD	13	0.000277840427341	CPT1A|CTTN|DDX39A|GIPC1|HRAS|MOGS|MRPL17|MTCH2|PPFIA1|PPME1|RETREG2|TALDO1|TFPT
Human Breast_Horlings10_183genes (20068109-SuppTable4)	46	AARS|AP1G1|ATP6V0D1|CENPN|CFAP20|CFDP1|CIAPIN1|CMC2|COG4|COQ9|COX4I1|CTCF|DDX19A|DDX19B|DDX28|DHX38|DUS2|EMC8|FAM96B|GABARAPL2|GFOD2|GOT2|GSE1|HSBP1|KARS|KATNB1|KIAA0513|KLHL36|MBTPS1|MLYCD|MON1B|NAE1|NOB1|NUP93|OGFOD1|PHKB|POLR2C|PSMD7|RANBP10|SF3B3|TERF2IP|TLDC1|UTP4|VPS4A|ZDHHC7|ZNF319	3.31282445203e-22	33	2.3973235241e-110	AMFR|ARL2BP|ATMIN|BCAR1|BRD7|CBFB|CDH1|CES2|CHD9|CHTF8|CKLF|CMTR2|CYB5B|DNAJA2|DYNC1LI2|FA2H|GCSH|GLG1|HEATR3|HSD11B2|MMP15|NFAT5|NUDT21|NUTF2|PAPD5|PLEKHG4|RBL2|SDR42E1|SLC9A5|USP10|VPS35|WDR59|ZFHX3	8	6.62564890405e-22	FBXL8|FTO|GINS2|MPHOSPH6|PRMT1|STK40|TOX3|USB1
Human Breast_Lee10_184genes (20068086-ST1-5)	11	CIAPIN1|CTCF|DDX28|DHODH|EDC4|KARS|KATNB1|NAE1|NFATC3|NUP93|PSMD7	6.52170343417e-06	7	3.22353397559e-12	CBFB|CES2|CHD9|CSNK2A2|PHLPP2|RBL2|TRADD	18	1.30434036448e-05	CCNF|DGCR2|E2F4|EP400|FAM216A|FANCA|HIRIP3|ITGB4|LAD1|LSR|MPHOSPH6|MRPL28|NUCB1|PRKCSH|SFPQ|SMARCD1|TCTA|TICAM1
Human Lung_Broet09_171genes (19176396-SuppTable3)	11	AP1G1|ATXN1L|CFDP1|DHODH|DHX38|KARS|PSMD7|TERF2IP|TMEM170A|TXNL4B|ZNRF1	1.06797952634e-18	8	2.01157696072e-18	ADAT1|BCAR1|GLG1|MEIOB|WDR59|ZFHX3|ZFP1|ZNF23	27	1.24382091969e-19	ATF7IP2|CAPN15|CARHSP1|CLEC16A|CRAMP1|DGCR2|FAHD1|FAM234A|GSPT1|HAGH|MAP2K2|METTL22|MKL2|MRPL28|MRPS34|MSRB1|NDUFB10|NME3|NUBP1|NUBP2|PDPK1|PMM2|RMI2|RPL18|TMEM186|TMEM191A|USP7
Human StemCell_Gratias07_18genes (17210724-Table1)	10	APRT|CHMP1A|COX4I1|EMC8|FBXO31|GALNS|KIAA0513|MBTPS1|TLDC1|ZDHHC7	4.60559080882e-10	6	2.75536899212e-30	ANKRD11|SPG7|TCF25|TRAPPC2L|USP10|ZCCHC14	1	9.21118161764e-10	SLC7A5
MOHANKUMAR_TLX1_TARGETS_UP	8	ATXN1L|GSE1|NUP93|OGFOD1|PHKB|PIEZO1|SF3B3|VPS4A	0.000262958929821	6	0.000525917789757	CENPT|CHTF8|CYB5B|DYNC1LI2|GLG1|NUTF2	60	6.9884276993e-11	ALG8|AP1M2|ARCN1|ASF1B|B4GAT1|BCAT2|CALR|CAMK2B|CAPN1|CAPN15|CARM1|CDC42EP2|CLPTM1|CORO1B|CRAMP1|DCTN1|DDIAS|DHRS2|DNAJA3|DNMT1|DPP3|E2F4|E2F7|ELAVL1|FUS|GINS3|H2AFX|HMBS|HNRNPM|HOMER1|ILF3|LDHB|MAZ|MCM3|MED13L|MKL2|MOGS|NUP210|PFKM|PHKG2|PLK1|PLPP2|POLA2|PPAN|PPFIA1|PPP2R1A|PRMT1|PRRC2A|PRUNE1|PSMD13|RAB1B|RRM1|SMG7|SRPRA|THAP12|TOMM40|TRAP1|TUBB|UBFD1|WEE1
MORF_PPP1CA	8	CFDP1|COX4I1|CTCF|GABARAPL2|HSBP1|KARS|MBTPS1|PSMD7	0.000478945822468	0	0.000957891326267		29	3.18668277365e-10	AP1B1|AP2S1|ARHGDIA|BANF1|COPE|COX6B1|DDX49|EIF3K|EIF4E2|ELOB|FIBP|GANAB|HNRNPUL1|NDUFS3|NDUFV1|POLR2G|POLR2I|PPP1CA|PPP2R1A|PRMT1|PSMC3|PSMD8|SF3B2|SMG7|SNRPD2|TECR|TMEM147|TRIM28|TUFM
MORF_PSMC1	9	CFDP1|COX4I1|CTCF|GABARAPL2|HSBP1|IST1|KARS|MBTPS1|PSMD7	0.000238531757518	0	0.00047703151059		27	3.20044454741e-08	AP2S1|ARHGDIA|BANF1|CAPNS1|COX6B1|EIF4E2|ELOB|FUBP1|HNRNPUL1|NDUFAB1|NDUFS3|PAF1|POLR2G|PPP1CA|PPP2R1A|PPP4C|PRMT1|PSMC3|PSMC4|PSMD8|PTPA|RBM4|RBM42|SF3B2|SMG7|TECR|TMEM147
Mouse Breast_Crawford07_758genes (18081427-TableS7)	29	AARS|DDX19B|DDX28|DHODH|DUS2|EDC4|FAM96B|GABARAPL2|ITFG1|MON1B|NIP7|NOB1|NUP93|OGFOD1|PDF|POLR2C|PRMT7|PSMD7|RFWD3|SETD6|SF3B3|SLC7A6OS|SPIRE2|TERF2|TMEM208|TXNL4B|UTP4|VPS4A|WWP2	1.36325368451e-05	17	1.15669305717e-28	AFG3L1P|ANKRD11|BRD7|CBFB|CMTR2|CNEP1R1|CSNK2A2|CTU2|CYB5B|GCSH|GLG1|HEATR3|MTHFSD|NUTF2|PLEKHG4|SLC7A6|VPS35	30	2.72650736902e-05	ANKRD26|ARHGEF18|ARMC6|DCAF15|DDX39A|DHPS|ELAVL1|FUBP1|FUT4|GINS3|GSPT1|GTPBP3|INTS5|LSM4|MPHOSPH6|NARS2|NDUFB7|NR2C2AP|NUBP1|NUBP2|PRKACA|RBM14|SELENOW|SGF29|SH3GL3|SNORA73A|TANGO6|TRAPPC5|TTC9C|UNKL
NIKOLSKY_BREAST_CANCER_16Q24_AMPLICON	13	APRT|BANP|CHMP1A|COX4I1|DEF8|EMC8|GALNS|GSE1|KLHDC4|MAP1LC3B|PIEZO1|RPL13|SPIRE2	2.87265897406e-09	16	5.82981873227e-44	ANKRD11|CDK10|CENPBD1|CTU2|DBNDD1|GAS8|MVD|SPATA2L|SPATA33|SPG7|TCF25|TRAPPC2L|VPS9D1|ZC3H18|ZCCHC14|ZFPM1	5	5.74531794812e-09	ACSF3|FANCA|GINS2|SLC7A5|ZNF276
PROVENZANI_METASTASIS_UP	27	AARS|ACD|ATP6V0D1|CENPN|CMC2|COG4|CTCF|DDX19A|DHODH|EDC4|FAM96B|GABARAPL2|GOT2|GSE1|IST1|KARS|MON1B|NAE1|NIP7|PSMD7|SF3B3|TERF2|TERF2IP|THAP11|TMEM208|TXNL4B|VPS4A	2.11939187109e-08	8	4.12192478134e-31	ATMIN|BRD7|CBFB|CES2|CSNK2A2|GCSH|GLG1|WDR59	10	4.23878374219e-08	LSM7|LTA4H|MCM3|MPHOSPH6|MRPL23|RNF126|TCF3|TOX3|TUBB|VARS
RNA processing [GoID:GO:0006396; evidenceTypes:EXP|IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	15	AARS|DDX19A|DDX19B|DHX38|DUS2|ESRP2|EXOSC6|KARS|NOB1|POLR2C|PRMT7|RPL13|SF3B3|TXNL4B|UTP4	3.47157358813e-05	10	6.94314717591e-05	ADAT1|CMTR2|CTU2|NOL3|NUDT21|PA2G4|PAPD5|PPIG|THOC2|ZCCHC6	112	3.42127352e-15	ADAT3|AFF2|AKAP8L|ALKBH8|BUD13|CACTIN|CD2BP2|CHERP|CLNS1A|CLP1|CPSF6|CPSF7|CWC15|DAZAP1|DCPS|DDX39A|DDX49|DUS3L|ELAVL1|ELP4|EXOSC5|FBL|FUS|GEMIN7|GTF2F1|GTPBP3|HNRNPD|HNRNPM|HNRNPU|HNRNPUL1|INTS4|INTS5|KHSRP|KRI1|LIN28A|LSM4|LSM7|MAP2K2|MPHOSPH6|NAT10|NUP98|PAF1|PHRF1|PIH1D1|POLR2E|POLR2G|POLR2I|POP4|PPP1R9B|PPP2R1A|PRKACA|PRPF19|PRPF31|PTBP1|PUS3|QTRT1|RAVER1|RBM4|RBM7|RBM42|RNF40|RNPS1|RPL14|RPL18|RPL18A|RPL28|RPL36|RPL37A|RPL38|RPS3|RPS5|RPS9|RPS11|RPUSD1|RPUSD4|RRP7A|RRP8|RSL1D1|SAFB|SART1|SCAF1|SF1|SF3A2|SF3B2|SF3B4|SFPQ|SFSWAP|SNRNP25|SNRNP70|SNRPA|SNRPD2|SRRT|SRSF8|SUGP1|SUPT5H|TBL3|THOC3|TRMT1|TRMT112|TRPT1|TSEN34|TSR3|U2AF2|UBL5|USB1|USP49|WDR18|WDR83|WT1|XAB2|ZNF473|ZPR1
ROYLANCE_BREAST_CANCER_16Q_COPY_NUMBER_UP	13	CFAP20|CMIP|CNOT1|COQ9|DEF8|FAM192A|GOT2|KATNB1|POLR2C|PSMD7|RSPRY1|SLC38A7|SPIRE2	4.08476204622e-08	12	1.01226212096e-33	ADGRG1|AFG3L1P|AKTIP|CENPBD1|CHD9|CSNK2A2|DBNDD1|GAN|GAS8|RBL2|TCF25|VPS35	5	8.16952409244e-08	FANCA|FTO|GINS3|GPT2|ZNF276
chr16q21	6	CFAP20|CNOT1|CTCF|SETD6|SLC38A7|ZNF319	2.22270363957e-05	4	5.57233249119e-15	AMFR|BBS2|CSNK2A2|NOL3	2	4.44540727858e-05	E2F4|GINS3
chr16q22	47	AARS|ACD|ATP6V0D1|ATXN1L|CFDP1|COG4|DDX19A|DDX19B|DDX28|DHODH|DHX38|DUS2|EDC4|ELMO3|ENKD1|ESRP2|EXOSC6|FAM96B|FHOD1|FUK|GABARAPL2|GFOD2|IST1|MTSS1L|NAE1|NFATC3|NIP7|NOB1|PDF|PLA2G15|PRMT7|PSKH1|PSMD7|RANBP10|RFWD3|SF3B3|SLC7A6OS|TERF2|TERF2IP|THAP11|TMEM208|TXNL4B|UTP4|VAC14|WWP2|ZFP90|ZNRF1	4.99929547437e-25	28	1.03443956005e-114	BCAR1|CBFB|CDH1|CENPT|CES2|CHTF8|CKLF|CMTM1|CMTM4|CMTR2|CYB5B|DYNC1LI2|GLG1|HSD11B2|KIAA0895L|MARVELD3|NFAT5|NUTF2|PHLPP2|PLEKHG4|SLC7A6|SLC9A5|TRADD|WDR59|ZFHX3|ZFP1|ZNF23|ZNF821	4	9.99859094873e-25	ALDOA|FBXL8|LCAT|TANGO6
chr16q23	10	AP1G1|CENPN|CMIP|HSBP1|KARS|MLYCD|MON1B|TMEM170A|VPS4A|ZDHHC7	1.50251070094e-06	5	1.88234829469e-21	ADAT1|ATMIN|FA2H|GCSH|OSGIN1	1	3.00502140188e-06	MPHOSPH6
chr16q24	17	APRT|BANP|CHMP1A|DEF8|EMC8|FBXO31|GALNS|GSE1|KIAA0513|KLHDC4|KLHL36|MAP1LC3B|MBTPS1|PIEZO1|RPL13|SPIRE2|TLDC1	2.78716511124e-09	21	5.33178056529e-56	AFG3L1P|ANKRD11|ATP2C2|CDK10|CENPBD1|CTU2|DBNDD1|GAN|GAS8|HSDL1|MTHFSD|MVD|PLEKHG4|SPG7|TAF1C|TCF25|TRAPPC2L|VPS9D1|ZC3H18|ZCCHC14|ZFPM1	5	5.57433022247e-09	ACSF3|FANCA|GINS2|SLC7A5|ZNF276
negative regulation of telomere maintenance [GoID:GO:0032205; evidenceTypes:IC|IDA|IEA|IMP|ISS|NAS|TAS]	3	ACD|TERF2|TERF2IP	0.000790372174966	1	0.000875992330454	PAPD5	6	0.000704752019479	ERCC1|HNRNPU|NAT10|SLX1A|SLX4|XRCC1
protection from non-homologous end joining at telomere [GoID:GO:0031848; evidenceTypes:IBA|IC|IEA|IMP|IPI|ISS]	3	ACD|TERF2|TERF2IP	0.000293126255199	0	0.00020885494173		2	0.000377397568669	ERCC1|XRCC1
ribonucleoprotein complex biogenesis [GoID:GO:0022613; evidenceTypes:EXP|IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	10	CNOT1|DDX28|EXOSC6|NIP7|NOB1|OGFOD1|PRMT7|RPL13|TXNL4B|UTP4	0.000470904478791	4	0.000941680935503	HEATR3|NOL3|PA2G4|PAPD5	50	1.28022079619e-07	AAMP|ATXN2|CD2BP2|CLNS1A|CLP1|DDX49|EDC3|EXOSC5|FBL|GEMIN7|KRI1|LSM4|MPHOSPH6|MPV17L2|MRPL11|NAT10|NOP53|PATL1|PIH1D1|POP4|PPAN|PRPF19|PRPF31|RPL14|RPL18|RPL18A|RPL28|RPL36|RPL37A|RPL38|RPS3|RPS5|RPS9|RPS11|RPUSD1|RRP7A|RRP8|RSL1D1|RUVBL2|SART1|SF1|SF3A2|SFSWAP|SNRPD2|TBL3|TRMT112|TSR3|WDR18|WDR74|XAB2
